Works from 2022
Can Second Coordination Sphere and Long-Range Interactions Modulate Hydrogen Atom Transfer in a Non-Heme Fe(II)-Dependent Histone Demethylase?, Shobhit Chaturvedi, Simahudeen Bathir Jaber Sathik Rifayee, Sodiq Waheed, Jon Wildey, Cait Warner, Christopher J. Schofield, Tatyana Karabencheva-Christova, and Christo Christov
Determination of optical density (OD) of oligodeoxynucleotide from HPLC peak area, Komal Chillar, Yipeng Yin, Adikari M. Eriyagama, and Shiyue Fang
Determination of Optical Density (OD) of Oligodeoxynucleotide from HPLC Peak Area, Komal Chillar, Yipeng Yin, Dhananjani Eriyagama, and Shiyue Fang
Mechanism of Mucin Recognition by Lectins: A Thermodynamic Study, Tarun K. Dam, Jared Edwards, Priyanka Dipak Kadav, and C. Fred Brewer
Revealing the Identity of Human Galectin-3 as a Glycosaminoglycan-Binding Protein, Jared L. Edwards, Priyanka Dipak Kadav, Purnima Bandyopadhyay, and Tarun K. Dam
Automated stepwise PEG synthesis using a base-labile protecting group, Dhananjani Eriyagama, Yipeng Yin, and Shiyue Fang
Molecular Characterization of Organophosphorus Compounds in Wildfire Smoke Using 21-T Fourier Transform-Ion Cyclotron Resonance Mass Spectrometry, Amna Ijaz, William Kew, Swarup China, Simeon Schum, and Lynn Mazzoleni
Importance of GLUT Transporters in Disease Diagnosis and Treatment, Abdelrahman Ismail and Marina Tanasova
Rapid Detection and Purification of Galectin-3 by the Capture and Release (CaRe) Method, Priyanka Dipak Kadav, Jared Edwards, Jessica Krycia, Purnima Bandyopadhyay, and Tarun K. Dam
Free-radical catalyzed oxidation reactions with cyclohexene and cyclooctene with peroxides as initiators, Rudy Luck and Nick Newberry
Synthesis and Characterization of Alkyne-Functionalized Photo-Cross-Linkable Polyesters, Warrick Ma, Xiaochu Ding, Ying Chen, and Yadong Wang
Late-Stage Functionalization through Click Chemistry Provides GLUT5-Targeting Glycoconjugate as a Potential PET Imaging Probe, Adelina Oronova and Marina Tanasova
Energetic competition in the complexation affinity of paracetamol with water and oxalic acid, Amanda Studinger and Loredana Valenzano-Slough
Emissions, Shawn Urbanski, Susan O'Neill, Amara L. Holder, Sarah Green, and Rick L. Graw
Mechanism of the Early Catalytic Events in the Collagenolysis by Matrix Metalloproteinase-1, Sodiq Waheed, Tatyana G. Karabencheva-Christova, Bella DiCastri, Brenden Kaski, Ciara LaRouche, and Gregg B. Fields
How Human TET2 Enzyme Catalyzes the Oxidation of Unnatural Cytosine Modifications in Double-Stranded DNA, Sodiq Waheed, Ann Varghese, Shobhit Chaturvedi, Tatyana Karabencheva-Christova, and Christo Christov
Genetic and Epigenetic Biomarkers Related to 2-Oxoglutarate/Fe(II)-Dependent Oxygenases and Implications for Disease and Toxicology, Jie Wang, Rui Qi, Huifang Li, Christo Christov, Nicolai Lehnert, and Deyu Li
Near-Infrared Fluorescent Probes with Amine-Incorporated Xanthene Platforms for the Detection of Hypoxia, Shulin Wan, Tara Vohs, Tessa Steenwinkel, Walter Reynolds White, Adrian Lara-Ramirez, Rudy Luck, Thomas Werner, Marina Tanasova, and Haiying Liu
Near-infrared fluorescent probe based on rhodamine derivative for detection of NADH in live cells, Yibin Zhang, Dilka Liyana Arachchige, Adenike Olowolagba, Rudy Luck, and Haiying Liu
A two-photon fluorogenic probe based on a coumarin schiff base for formaldehyde detection in living cells, Yibin Zhang, Xianyu Qiu, Lin Sun, Qin Yan, Rudy Luck, and Haiying Liu
Near-infrared fluorescent probe based on cyanine scaffold for sensitive detection of uranyl ions in living cells and water samples, Yibin Zhang, Lin Sun, Qing Yan, Xianyu Qiu, Yueting Cheng, Boling Wang, Xiaoping Tan, Mingxi Fang, Rudy Luck, and Haiying Liu
Works from 2021
Open source software toolchain for automated non‐targeted screening for toxins in alternative foods, S. W. Breuer, L. Toppen, S. K. Schum, and J. M. Pearce
Preliminary study of modified asphalt binders with thermoplastics: The Rheology properties and interfacial adhesion between thermoplastics and asphalt binder, Siyu Chen, Tiankai Che, Alaeddin Mohseni, Haleh Azari, Patricia Heiden, and Zhanping You
Atomic and electronic structure determinants distinguish between ethylene formation and L-arginine hydroxylation reaction mechanisms in the ethylene-forming enzyme, Christo Z. Christov, Shobhit Chaturvedi, Rajeev Ramanan, Jian Hu, and Robert P. Hausinger
The resilience of cancer-specific protein galectin-3: Implications in biological functions, Tarun K. Dam, Priyanka Dipak Kadav, Christina Welch, Jared Edwards, and Purnima Bandyopadhyay
Effect of Cations on the Oxidation and Atmospheric Corrosion of Iron Interfaces to Minerals, Chathura de Alwis, Mikhail Trought, Julia Lundeen, and Kathryn A. Perrine
The Ion Pair Thermal Model of MALDI MS, Shiyue Fang
Hydrochloric acid modification and lead removal studies on naturally occurring zeolites from Nevada, New Mexico, and Arizona, Garven M. Huntley, Rudy Luck, Michael Mullins, and Nick Newberry
A machine learning-driven stochastic simulation of underground sulfide distribution with multiple constraints, Qiuyan Ji, Feilong Han, Wei Qian, Qing Guo, and Shulin Wan
Molecular and Mechanistic Basis of Lectin-Glycan Interactions, Priyanka D. Kadav, Jared L. Edwards, Purnima Bandyopadhyay, C. Fred Brewer, and Tarun K. Dam
Detection and purification of lectins and glycoproteins by a non-column chromatographic technique, Priyanka Dipak Kadav, Jared L. Edwards, Purnima Bandyopadhyay, and Tarun K. Dam
Guidelines for the use and interpretation of assays for monitoring autophagy (4th edition), Daniel J. Klionsky, Amal Kamal Abdel-Aziz, Sara Abdelfatah, Mahmoud Abdellatif, Asghar Abdoli, Steffen Abel, Lanrong Bi, and et. al.
Stepwise PEG synthesis featuring deprotection and coupling in one pot, Logan Mikesell, Dhananjani N.A.M. Eriyagama, Yipeng Yin, Bao Yuan Lu, and Shiyue Fang
Targeting of glut5 for transporter-mediated drug-delivery is contingent upon substrate hydrophilicity, Nazanin Nahrjou, Avik Ghosh, and Marina Tanasova
Hydroxylpyromorphite, a mineral important to lead remediation: Modern description and characterization, Travis A. Olds, Anthony R. Kampf, John F. Rakovan, Peter C. Burns, Owen P. Mills, and Cullen Laughlin-Yurs
What is the Catalytic Mechanism of Enzymatic Histone N-Methyl Arginine Demethylation and Can It be Influenced by an External Electric Field?, Rajeev Ramanan, Sodiq Waheed, Sodiq O. Waheed, Christopher J. Schofield, and Christo Christov
Investigating the relationship between adhesion forces and surface functionalization using atomic force microscopy, Mikhail Trought and Kathryn Perrine
Effects of the Nature of the Metal Ion, Protein and Substrate on the Catalytic Center in Matrix Metalloproteinase-1: Insights from Multilevel MD, QM/MM and QM Studies, Ann Varghese, Shobhit Chaturvedi, Bella DiCastri, Emerald Mehler, Gregg B. Fields, and Tatyana Karabencheva-Christova
Effects of the Nature of Metal Ion, Protein and Substrate on the Catalytic Center in Matrix Metalloproteinase-1: Insights from Multilevel MD, QM/MM and QM Studies, Ann Varghese, Shobhit Chaturvedi, Bella DiCastri, Emerald Mehler, Gregg B. Fields, and Tatyana G. Karabencheva-Christova
A synergy between the catalytic and structural Zn(II) ions and the enzyme and substrate dynamics underlies the structure–function relationships of matrix metalloproteinase collagenolysis, Ann Varghese, Shobhit Chaturvedi, Gregg B. Fields, and Tatyana Karabencheva-Christova
Catalytic Mechanism of Human Ten-Eleven Translocation-2 (TET2) Enzyme: Effects of Conformational Changes, Electric Field, and Mutations, Sodiq Waheed, Shobhit Chaturvedi, Tatyana Karabencheva-Christova, and Christo Z. Christov
A ratiometric near-infrared fluorescent probe based on a novel reactive cyanine platform for mitochondrial pH detection, Shulin Wan, Shuai Xia, Jerry Medford, Emma Durocher, Tessa Steenwinkel, Lexi Rule, Yibin Zhang, Rudy Luck, Thomas Werner, and Haiying Liu
Engaging the Youth Environmental Alliance in Higher Education to Achieve the Sustainable Development Goals, Sarah Whipple, Shardul Tiwari, Tashiana Osborne, Gillian Bowser, Sarah Green, Pamela H. Templer, and Susie Ho
Ratiometric Near-Infrared Fluorescent Probes Based on Hemicyanine Dyes Bearing Dithioacetal and Formal Residues for pH Detection in Mitochondria, Yunnan Yan, Yibin Zhang, Shuai Xia, Shulin Wan, Tara Vohs, Marina Tanasova, Rudy Luck, and Haiying Lui
Ratiometric Detection of Glutathione Based on Disulfide Linkage Rupture between a FRET Coumarin Donor and a Rhodamine Acceptor, Yibin Zhang, Shuai Xia, Shulin Wan, Tessa Steenwinkel, Tara Vohs, Rudy Luck, Thomas Werner, and Haiying Liu
Works from 2020
Acetylation of Aβ42 at Lysine 16 Disrupts Amyloid Formation., Rashmi Adhikari, Mu Yang, Nabanita Saikia, Colina Dutta, Wafa Fhad A Alharbi, Zhiying Shan, Ravindra Pandey, and Ashutosh Tiwari
Understanding the Effect of Precipitation Process Variables on Hardwood Lignin Characteristics and Recovery from Black Liquor, Raisa Carmen Andeme Ela, Lauren Spahn, Niloofar Safaie, Robert Charles Ferrier, and Rebecca Ong
Double-Shell Lignin Nanocapsules Are a Stable Vehicle for Fungicide Encapsulation and Release, Raisa Carmen Andeme Ela, Momoko Tajiri, Nick Newberry, Patricia Heiden, and Rebecca Ong
Syntheses, theoretical studies, and crystal structures of [ni(Ii)ssrrl](pf6)2 and [ni(ii)srsrl](cl)(pf6) that contains anagostic interactions, Peyton C. Bainbridge, Rudy Luck, and Nick Newberry
Richardsite, Zn2cugas4, a new gallium-essential member of the stannite group from the gem mines near Merelani, Tanzania, Luca Bindi and John A. Jaszczak
Educating students in solutions-oriented science, Gillian Bowser, Sarah A. Green, Susie S. Ho, and Pamela H. Templer
Erratum: New near-infrared fluorescent probes with single-photon anti-stokes-shift fluorescence for sensitive determination of pH variances in lysosomes with a double-checked capability (ACS Applied Bio Materials (2018) 1:3 (549−560) DOI: 10.1021/acsabm.8b00020), Tzu Ho Chen, Shuwei Zhang, Meghnath Jaishi, Rashmi Adhikari, Jianheng Bi, Mingxi Fang, Shuai Xia, Yibin Zhang, Rudy L. Luck, Ranjit Pati, Hsien Ming Lee, Fen Tair Luo, Ashutosh Tiwari, and Haiying Liu
Highly sensitive determination of 4-nitrophenol with coumarin-based fluorescent molecularly imprinted poly (ionic liquid), Hao Dai, Ziyi Deng, Yanbo Zeng, Jian Zhang, Yiwen Yang, Qinyan Ma, Wenling Hu, Longhua Guo, Lei Li, Shulin Wan, and Haiying Liu
New Approach to Simultaneous In Situ Measurements of the air/liquid/solid interface using PM-IRRAS, Chathura de Alwis, Timothy Leftwich, and Kathryn Perrine
In Situ PM-IRRAS at the Air/Electrolyte/Solid Interface Reveals Oxidation of Iron to Distinct Minerals, Chathura de Alwis and Kathryn A. Perrine
Investigation of N2 adsorption on Fe3O4(001) using ambient pressure X-ray photoelectron spectroscopy and density functional theory, Gemechis Degaga, Mikhail Trought, Slavomir Nemsak, Ethan J Crumlin, Max Seel, Ravindra Pandey, and Kathryn Perrine
Dim and Dmoc Protecting Groups for Oligodeoxynucleotide Synthesis, Shiyue Fang, Dhananjani Eriyagama, Yinan Yuan, Shahien Shahsavari, Jinsen Chen, Xi Lin, and Bhaskar Halami
An international laboratory comparison of dissolved organic matter composition by high resolution mass spectrometry: Are we getting the same answer?, Jeffrey A. Hawkes, Juliana D'Andrilli, Jeffrey N. Agar, Mark P. Barrow, Stephanie M. Berg, Núria Catalán, Hongmei Chen, Rosalie K. Chu, Richard B. Cole, Thorsten Dittmar, Rémy Gavard, Gerd Gleixner, Patrick G. Hatcher, Chen He, Nancy J. Hess, Ryan H.S. Hutchins, Amna Ijaz, Hugh E. Jones, William Kew, Maryam Khaksari, Diana Catalina Palacio Lozano, Jitao Lv, Lynn Mazzoleni, Beatriz E. Noriega-Ortega, Helena Osterholz, Nikola Radoman, Shuzhen Zhang, Phoebe Zito, and David C. Podgorski
A near-infrared fluorescent probe based on a hemicyanine dye with an oxazolidine switch for mitochondrial pH detection, Wafa Mazi, Yunnan Yan, Yibin Zhang, Shuai Xia, Shulin Wan, Momoko Tajiri, Rudy Luck, and Haiying Liu
Insights on dissolved organic matter production revealed by removal of charge-transfer interactions in senescent leaf leachates, Karl M. Meingast, Brice K. Grunert, Sarah A. Green, Evan S. Kane, and Nastaran Khademimoshgenani
Virus and chlorine adsorption onto guanidine modified cellulose nanofibers using covalent and hydrogen bonding, Xue Mi, Soha Albukhari, Caryn L. Heldt, and Patricia Heiden
Uncertainty Analysis for Engineers and Scientists, Faith A. Morrison
Topographical ues overlaid with fructose-like molecules to assess breast cancer recruitment in nanofiber scaffolds, Carolynn Que, Samerender Nagam Hanumantharao, Brennan Vogl, Marina Tanasova, and Smitha Rao
Catalysis by the JmjC histone demethylase KDM4A integrates substrate dynamics, correlated motions and molecular orbital control, Rajeev Ramanan, Shobhit Chaturvedi, Nicolai Lehnert, Christopher J. Schofield, Tatyana Karabencheva-Christova, and Christo Z. Christov
Citrate Crosslinked Poly(Glycerol Sebacate) with Tunable Elastomeric Properties, Brandon B. Risley, Xiaochu Ding, Ying Chen, Paula G. Miller, and Yadong Wang
MFAssignR: Molecular formula assignment software for ultrahigh resolution mass spectrometry analysis of environmental complex mixtures, Simeon Schum, Laura E. Brown, and Lynn Mazzoleni
Oriented (Local) Electric Fields Drive the Millionfold Enhancement of the H-Abstraction Catalysis Observed for Synthetic Metalloenzyme Analogues., Thijs Stuyver, Rajeev Ramanan, Dibyendu Mallick, and Sason Shaik
Effects of Wet Chemical Oxidation on Surface Functionalization and Morphology of Highly Oriented Pyrolytic Graphite, Mikhail Trought, Isobel Wentworth, Timothy Leftwich, and Kathryn Perrine
Role of structural dynamics in selectivity and mechanism of non-heme Fe(II) and 2-Oxoglutarate-dependent Oxygenases involved in DNA repair, Sodiq Waheed, Rajeev Ramanan, Shobhit Chaturvedi, Nicolai Lehnert, Christopher J. Schofield, Christo Z. Christov, and Tatyana Karabencheva-Christova
A FRET-based near-infrared ratiometric fluorescent probe for detection of mitochondria biothiol, Lu Wang, Jianbo Wang, Shuai Xia, Xinxin Wang, Yating Yu, Hongwei Zhou, and Haiying Liu
A Rapid and Facile Purification Method for Glycan-Binding Proteins and Glycoproteins, Christina Welch, Priyanka Dipak Kadav, Jared L. Edwards, Jessica Krycia, Melanie Talaga, Purnima Bandyopadhyay, and Tarun K. Dam
Ratiometric fluorescent probes based on through-bond energy transfer of cyanine donors to near-infrared hemicyanine acceptors for mitochondrial pH detection and monitoring of mitophagy., Shuai Xia, Jianbo Wang, Yibin Zhang, Nick Whisman, Jianheng Bi, Tessa E Steenwinkel, Shulin Wan, Jerry Medford, Momoko Tajiri, Rudy Luck, Thomas Werner, and Haiying Liu
A new near-infrared ratiometric fluorescent probe based on quinoline-fused rhodamine dye for sensitive detection of cysteine and homocysteine in mitochondria, Yating Yu, Jianbo Wang, Huan Xiang, Linkun Ying, Chenyuan Wu, Hongwei Zhou, and Haiying Liu
Cell Membrane-Specific Fluorescent Probe Featuring Dual and Aggregation-Induced Emissions, Yibin Zhang, Yunnan Yan, Shuai Xia, Shulin Wan, Tessa Steenwinkel, Jerry Medford, Rudy Luck, Thomas Werner, and Haiying Liu
De-agglomeration of cathode composites for direct recycling of Li-ion batteries., Ruiting Zhan, Trevyn Payne, Timothy Leftwich, Kathryn Perrine, and Lei Pan
Works from 2019
Extensive soot compaction by cloud processing from laboratory and field observations, Janarjan Bhandari, Swarup China, Kamal Kant Chandrakar, Greg Kinney, Will Cantrell, Raymond Shaw, Lynn Mazzoleni, Giulia Girotto, Noopur Sharma, Kyle Gorkowski, Stefania Gilardoni, Stefano Decesari, Maria Cristina Facchini, Nicola Zanca, Giulia Pavese, Francesco Esposito, Manvendra K Dubey, Allison C Aiken, Rajan K Chakrabarty, Hans Moosmüller, Timothy B Onasch, Rahul A Zaveri, Barbara V Scarnato, Paulo Fialho, and Claudio Mazzoleni
Cardioprotection effects of LPTC-5 involve mitochondrial protection and dynamics, Wei Bi, Yue Bi, Pengfei Li, Shanshan Hou, Xin Yan, Connor Hensley, Yanrong Zhang, Steffen Jockusch, Thomas Legalley, K. Michael Gibson, and Lanrong Bi
Fructose and prostate cancer: toward an integrated view of cancer cell metabolism., Daniela Carreño, Néstor Corro, Verónica Torres-Estay, Loreto P Véliz, Rodrigo Jaimovich, Pedro Cisternas, Ignacio F San Francisco, Paula C Sotomayor, Marina Tanasova, Nibaldo C Inestrosa, and Alejandro S Godoy
Catalysis by the non-heme iron(II) histone demethylase PHF8 involves iron center rearrangement and conformational modulation of substrate orientation, Shobhit Chaturvedi, Rajeev Ramanan, Nicolai Lehnert, Christopher J. Schofield, Tatyana Karabencheva-Christova, and Christo Z. Christov
Conformational dynamics underlies different functions of human KDM7 histone demethylases, Shobhit Chaturvedi, Rajeev Ramanan, and Sodiq Waheed
Structure-function relationships in KDM7 histone demethylases., Shobhit Chaturvedi, Rajeev Ramanan, Sodiq Waheed, Tatyana Karabencheva-Christova, and Christo Christov
Dynamics and Catalytic Mechanism of Histone Demethylase PHF8, Christo Christov, Shobhit Chaturvedi, Rajeev Ramanan, and Tatyana Karabencheva-Christova
Modelling the hygroscopic growth factors of aerosol material containing a large water-soluble organic fraction, collected at the Storm Peak Laboratory, Simon L. Clegg, Lynn R. Mazzoleni, Vera Samburova, Nathan Taylor, Don Collins, Simeon Schum, and A. Gannet Hallar
The Dual Specific Hemolysin-X is a Bioactive Natural Product that Forms Pores on the Surface of Erythrocytes, Tarun K. Dam, Christina Welch, Jared L. Edwards, Priyanka Dipak Kadav, and Michael Hromada
Spontaneous selective deposition of iron oxide nanoparticles on graphite as model catalysts, Chathura de Alwis, Timothy Leftwich, Pinaki Mukherjee, Alex Denofre, and Kathryn Perrine
Detecting Zn(II) Ions in Live Cells with Near-Infrared Fluorescent Probes., Mingxi Fang, Shuai Xia, Jianheng Bi, Travis P Wigstrom, Loredana Valenzano, Jianbo Wang, Marina Tanasova, Rudy Luck, and Haiying Liu
Linear Oligosulfoxides: Synthesis and Solubility Studies, Bhaskar Halami, Dhananjani N. A. M. Eriyagama, Komal Chillar, Zack Nelson, Lucas Prehoda, Yipeng Yin, Bao-Yuan Lu, Brett Otto, Liam Haggerty, and Shiyue Fang
Conformational and Mechanistic Studies of AlkB and AlkBH2 DNA Demethylases, Tatyana Karabencheva-Christova, Sodic Waheed, Shobhit Chaturvedi, Rajeev Ramanan, and Christo Christov
Antibacterial properties of mussel-inspired polydopamine coatings prepared by a simple two-step shaking-assisted method, Pegah Kord Fooroshani, Elizabeth Polega, Kevin Thomson, Mohammad Saleh Akram Bhuiyan, Rattapol Pinnaratip, Mikhail Trought, Chito E. Kendrick, Yuesheng Gao, Kathryn Perrine, Lei Pan, and Bruce P. Lee
2-(3,4,5-trihydroxyoxan-2-yl)hydrazine-1-carbothioamide monohydrate, Rudy Luck and Derek Horton
(2R,3S,4S,5S)-6,6-bis(ethylthio)hexane-1,2,3,4,5-pentayl pentaacetate(2R,3S,4S,5S)-6,6-bis(ethylthio)hexane-1,2,3,4,5-pentayl pentaacetate, Rudy Luck, Derek Horton, and Olivier Marcq
6-(2-methyl-2-phenylhydrazinylidene)hexane-1,2,3,4,5-pentayl penta-acetate, Rudy Luck, Derek Horton, and Olivier Marcq
Experimental Crystal Structure Determination, Rudy Luck, Derek Horton, and Olivier Marcq
New Structure undergoing enhancement, Rudy Luck, Derek Horton, and Olivier Marcq
Syntheses, X-ray structure, emission and vibrational spectroscopies, DFT and thermogravimetric studies of two complexes containing the bidentate ligand 5-phenyl-1H-pyrazol-3-yl)methyl) phosphine oxide, Rudy Luck, John S. Maass, Nick Newberry, and Matthias Zeller
Fluorescent probes with high pKa values based on traditional, near-infrared rhodamine, and hemicyanine fluorophores for sensitive detection of lysosomal pH variations, Wafa Mazi, Rashmi Adhikari, Yibin Zhang, Shuai Xia, Mingxi Fang, Rudy Luck, Momoko Tajiri, Ashutosh Tiwari, Marina Tanasova, and Haiying Liu
Floating treatment wetlands as biological buoyant filters for wastewater reclamation., Khadeeja Rehman, Amna Ijaz, Muhammad Arslan, and Muhammad Afzal
Sensitive oligodeoxynucleotide synthesis using dim and Dmoc as protecting groups, Shahien Shahsavari, Dhananjani Eriyagama, Jinsen Chen, Bhaskar Halami, Yipeng Yin, Komal Chillar, and Shiyue Fang
Electrophilic oligodeoxynucleotide synthesis using dM-Dmoc for amino protection, Shahien Shahsavari, Dhananjani N. A. M. Eriyagama, Bhaskar Halami, Vagarshak Begoyan, Marina Tanasova, Jinsen Chen, and Shiyue Fang