Document Type
Article
Publication Date
6-22-2022
Department
Department of Mathematical Sciences
Abstract
Recently, gene-based association studies have shown that integrating genome-wide association studies (GWAS) with expression quantitative trait locus (eQTL) data can boost statistical power and that the genetic liability of traits can be captured by polygenic risk scores (PRSs). In this paper, we propose a new gene-based statistical method that leverages gene-expression measure-ments and new PRSs to identify genes that are associated with phenotypes of interest. We used a generalized linear model to associate phenotypes with gene expression and PRSs and used a score-test statistic to test the association between phenotypes and genes. Our simulation studies show that the newly developed method has correct type I error rates and can boost statistical power compared with other methods that use either gene expression or PRS in association tests. A real data analysis Figurebased on UK Biobank data for asthma shows that the proposed method is applicable to GWAS.
Publication Title
Genes
Recommended Citation
Yan, S.,
Sha, Q.,
&
Zhang, S.
(2022).
Gene-Based Association Tests Using New Polygenic Risk Scores and Incorporating Gene Expression Data.
Genes,
13(7).
http://doi.org/10.3390/genes13071120
Retrieved from: https://digitalcommons.mtu.edu/michigantech-p/16215
Creative Commons License
This work is licensed under a Creative Commons Attribution 4.0 International License.
Version
Publisher's PDF
Publisher's Statement
© 2022 by the authors. Licensee MDPI, Basel, Switzerland. This article is an open access article distributed under the terms and conditions of the Creative Commons Attribution (CC BY) license (https:// creativecommons.org/licenses/by/ 4.0/). Publisher’s version of record: https://doi.org/10.3390/genes13071120