Digital Commons @ Michigan Tech Digital Commons @ Michigan Tech Effect of thermodenuding on the structure of nascent flame soot Effect of thermodenuding on the structure of nascent flame soot aggregates aggregates

: The optical properties (absorption and scattering) of soot particles depend on soot size and index of refraction, but also on the soot complex morphology and the internal mixing with materials that can condense on a freshly emitted (nascent) soot particle and coat it. This coating can affect the soot optical properties by refracting light, or by changing the soot aggregate structure. A common approach to studying the effect of coating on soot optical properties is to measure the absorption and scattering coefﬁcients in ambient air, and then measure them again after removing the coating using a thermodenuder. In this approach, it is assumed that: (1) most of the coating material is removed; (2) charred organic coating does not add to the refractory carbon; (3) oxidation of soot is negligible; and, (4) the structure of the pre-existing soot core is left unaltered, despite the potential oxidation of the core at elevated temperatures. In this study, we investigated the validity of the last assumption, by studying the effect of thermodenuding on the morphology of nascent soot. To this end, we analyzed the morphological properties of laboratory generated nascent soot, before and after thermodenuding. Our investigation shows that there is only minor restructuring of nascent soot by thermodenuding.


Introduction
Soot particles are mostly composed of refractory carbonaceous material that forms from incomplete combustion during burning activities [1]. A nascent soot particle appears as a fractal-like (sometimes referred to as a lacy) aggregate of small spherules (called nanospheres or monomers) [2] and its structure is scale invariant [3]. Here, the term "nascent" is used to refer to freshly emitted soot particles that have a negligible coating on the monomers. The diameter of these monomers varies in a range from 10 nm to more than 50 nm, depending on the fuel source and combustion conditions [4][5][6][7]. During the atmospheric processing, soot particles interact with organic and inorganic materials (in the form of aerosol or condensable vapors). During these interactions, soot undergoes carbon, and/or some oxidation of the carbonaceous matter. The charring of organic particulate material into elemental carbon is a known phenomenon under the elevated temperatures employed in organic carbon and elemental carbon (OCEC) analyses [34,35]. Issues that influence the charring include temperatures and residence times, as well as chemical composition. Charring is likely to be more of an issue for oxidized organics, such as biomass burning or secondary organic aerosol (SOA), than reduced organics, such as efficient combustion products (i.e., diesel and laboratory flame soot) [36,37]. Two significant differences between OCEC and thermodenuding include: (1) OCEC techniques typically operate at higher temperatures than TDs, and (2) OCEC charring occurs in a helium atmosphere, whereas thermodenuding occurs in air (i.e., oxidizing environment). Thus, at a low temperature (<300 • C), thermodenuding will be less likely to char, and the particles may be more susceptible to oxidation due to an oxidizing environment. Oxidation of refractory carbon soot typically occurs at significantly elevated temperatures, but can occur at lower temperatures as well, especially if catalyzed by impurities in the soot [38]. Soot oxidation is likely limited in thermodenuding due to the low temperatures and the relatively short residence time, but this issue will require more study in the future.
We finally discuss the assumption (4), which is the focus of our study. Previous studies have shown that nascent soot particles can restructure during the condensation or evaporation of the coating material, depending on their surface tension [39][40][41]. Xue et al. [28] found significant restructuring of soot particles when the particles were first coated with glutaric acid and then denuded. Ghazi and Olfert [16] reported the dependence of soot restructuring on the mass amount of different coating material types. This restructure alone can affect the optical properties of soot particles. For example, a laboratory study was performed on soot compacted upon humidification; the study measured modest changes in the absorption cross-section (5% to 14%), but the extinction cross-section was much more sensitive to compaction, with changes of more than 30% [42]. Similarly, China et al. [8,43], using numerical simulations, predicted small changes in the absorption cross-section (a few percent), but a much more substantial change in the total scattering cross section (up to~300%) upon soot compaction. In addition to affecting the optical properties, changes in the soot structure can also affect the results of laser induced incandescence measurements [5]. Finally, the condensation of secondary organic matter preferentially takes place in empty pores on soot particles, and therefore, it is possible that compaction will affect secondary organic condensation on soot [44]. Two potential explanations for the coated soot restructuring detected during these studies can be: (1) Soot might be compacted during condensation of the coating materials due to surface tension effects [14,41,45,46]. (2) The removal of the coating material during the subsequent thermodenuding may cause compaction when the coating evaporates, still due to surface tension effects [39,40]. However, we hypothesize a third potential pathway, in which soot restructuring might take place solely due to the thermodenuding process, through the added thermal energy. Coating alone might not cause full compaction (i.e., completely collapsed structure). For example, in an experiment, Leung et al. [47] found that the coating did not restructure the soot aggregate even when the aggregate was completely covered by the coating material. Some coating material indeed results in substantial or even maximum compaction, but other coating materials actually result in negligible compaction. A clear example is shown in a laboratory study where particles coated with sulfuric acid did undergo severe restructuring, while the soot particles coated by dioctyl sebacate showed only minimal or no compaction [9]. Also, from Mexico City samples, Adachi and Buseck [4] found coated soot but with lacy structure. For the case of coated but yet only partially compacted soot, thermodenuding may facilitate further restructuring. The coating material can become less viscous at the elevated temperatures during the thermodenuding and restructure the soot core [47].
Next, we will discuss some lines of evidence that the thermodenuding process alone can in some cases, favor the compaction of lacy aggregates of various materials, even in the absence of coating material that condenses onto the primary aggregates. If a similar process happens for ambient soot, such a process would potentially bias the measured properties (e.g., absorption or scattering enhancements) of soot when a thermodenuder is used. The main objective of our study is to test this hypothesis, to assure that the themodenuding process alone does not introduce this bias. A couple of potential restructuring processes induced during thermodenuding, are discussed next: (a) When heated, fractal-like aggregates of metal nanoparticles, such as silver, copper, and metallic oxides (e.g., titania), have been found to restructure to more compact morphologies at temperatures well below the bulk material melting points. For example, thermal restructuring has been found in silver aggregates, even at temperatures as low as 100 • C, with full compaction at just 350 • C (much below the melting temperature of silver), while the primary particle size remained unchanged [48,49]. Another study found that aggregates of titania started to collapse when temperatures reached 700 • C [50]. These authors speculated that the heating causes the weakest branches in an aggregate to rotate around their contact points, resulting in the aggregate restructuring. Alternatively, Schmidt-Ott [51] hypothesized that the monomers in silver nanoparticles aggregates might slide on each other when heated, also causing compaction. Both processes would restructure the aggregates without a complete breakage of the bonds between the monomers due to Van der Waals forces. (b) As mentioned earlier, nascent soot aggregates typically have polycyclic aromatic hydrocarbons thinly coating them. This nascent coating could play a role in determining the soot structure if the coating properties (i.e., viscosity and surface tension) change at the higher temperature of the thermodenuder. Chen et al. [52] found that some polycyclic aromatic hydrocarbons, like phenanthrene and flouranthene, when present as a subnanometer layer on soot, behaved as subcooled liquid that weakened the bonds between the monomers, allowing them to slide and roll over each other and resulting in soot restructuring. Rothenbacher et al. [53] provided evidence that thermodenuding might make a difference in the strength of the adhesive bonds between the monomers. For aged soot, they found a higher degree of fragmentation for thermodenuded particles (75% at 280 • C) than for untreated (not thermodenuded) particles (60%) when impacted at~200 m/s. The degree of fragmentation was defined as the fraction of broken bonds in an aggregate. Although the process involved both the effect of coating and impaction, the higher degree of fragmentation for thermodenuded particles suggests that the thermal energy has a role on the increased degree of fragmentation.
These lines of evidence motivated us to study the potential effects of thermodenuding on the specific case of nascent soot. With this goal in mind, we analyzed the structure of laboratory generated nascent soot particles produced from two different fuel sources (ethylene flame and methane flame) and size selected at different mobility diameters before and after thermodenuding. This assessment is important for evaluating the potential biases that might be introduced by thermodenuding while, for example, estimating the absorption or scattering enhancements of laboratory or ambient soot particles.

Experimental Setup and Sample Collection
We analyzed five pairs of mobility-selected soot samples collected during two different experiments: the Boston College Experiment 2 (BC2) and the Boston College Experiment 4 (BC4). The sampling schematics are shown in the Figure 1a,b. None of the soot particles were coated with additional external coating material, and the minimal coating present on the nascent soot was solely due to the fuel residuals accumulated during the combustion and dilution processes.
Three soot sample sets were collected during BC2 from the combustion of ethylene and oxygen using a premixed flat flame burner [9]. The fuel equivalence ratio (∅) for all the three sample sets was 2.1. A TD [29] was used to remove volatile components from the nascent soot particles. The heating section of the TD was set at 250 • C to vaporize the non-refractory soot components, which were absorbed by a charcoal section maintained at room temperature. Particles for a range of mobility diameters (d m ) were selected to investigate the effect of thermodenuding on particle size. For our investigation, we selected three sets of nascent vs. nascent-denuded soot particles with d m = 153 nm, 181 nm and 250 nm for nascent and d m = 151 nm, 175 nm, and 241 nm for the corresponding denuded soot particles. Soot particles were collected on 13 mm diameter Nuclepore polycarbonate filters having a pore size of 0.3 µm (Whatman Inc., Chicago, IL, USA). Additional details regarding the BC2 experimental set-up are provided elsewhere [9]. In addition, we selected two sets of soot samples generated during BC4 from the combustion of methane in an inverted diffusion flame burner (methane and O2 mixture) at a dm = 253 nm and 252 nm for nascent and dm = 253 nm, and 251 nm for the corresponding denuded soot particles. The global ∅ for both sample sets was about 0.7, but the actual value of ∅ is unknown. In the diffusion flame, the fuel burns in excess of air making the value of ∅ less than 1. Effluent from the flame burner was passed through separate annular denuders loaded with molecular sieves and activated charcoal to remove water vapor and volatile organic compounds from the sample flow. As in BC2, a Huffman TD (heating section set at 270 °C) was used to remove the volatile components. For both experiments, the sample flow rate through the TD was 2 LPM, resulting in a residence time of 5 s in the heating section and 4 s in the denuder section. During BC4, unlike during BC2, particles were first mobility size selected by a Differential Mobility Analyzer (DMA) (TSI Inc., Saint Paul, MN, USA) and the mass was selected by a Centrifugal Particle Mass Analyzer (CPMA) (Cambustion Ltd., Cambridge, UK) before thermodenuding. The first set of samples consisted of nascent and nascent-denuded soot, while the second set consisted of nascent-oxidized and nascent-oxidized-denuded soot. Soot was oxidized by exposure to ozone (O3) and hydroxyl (OH) radicals in a Potential Aerosol Mass (PAM) oxidation flow reactor [54], at input O3 and H2O mixing ratios of ~15 ppm and ~1%, and UV actinic flux ~2 × 10 12 ph cm −2 s −1 (λ = 254 nm). These operating conditions correspond to an integrated OH exposure of approximately 2 × 10 12 molec cm −3 s [55], and likely generate highly oxygenated organic molecules, such as carboxylic acids on the surface of the nascent-oxidized soot particles [56]. The nascentoxidized soot was thermo-denuded at a temperature of 270 °C. The set of nascent-oxidized soot samples was included here to investigate if the thermodenuding effect is different for nascent versus nascentoxidized soot. During BC4, soot particles were collected on 13 mm diameter Nuclepore filters having a pore size of 0.1 µm diameter (Whatman Inc., Chicago, IL, USA).
All the filters were coated with 1.8 (±10%) nm thick layer of Pt/Pd alloy in a sputter coater (Hummer ® 6.2, Anatech USA, Union city, CA, USA) and imaged with a field emission scanning electron microscope (FE-SEM) (Hitachi S-4700, Tokyo, Japan). From the FE-SEM images, several In addition, we selected two sets of soot samples generated during BC4 from the combustion of methane in an inverted diffusion flame burner (methane and O 2 mixture) at a d m = 253 nm and 252 nm for nascent and d m = 253 nm, and 251 nm for the corresponding denuded soot particles. The global ∅ for both sample sets was about 0.7, but the actual value of ∅ is unknown. In the diffusion flame, the fuel burns in excess of air making the value of ∅ less than 1. Effluent from the flame burner was passed through separate annular denuders loaded with molecular sieves and activated charcoal to remove water vapor and volatile organic compounds from the sample flow. As in BC2, a Huffman TD (heating section set at 270 • C) was used to remove the volatile components. For both experiments, the sample flow rate through the TD was 2 LPM, resulting in a residence time of 5 s in the heating section and 4 s in the denuder section. During BC4, unlike during BC2, particles were first mobility size selected by a Differential Mobility Analyzer (DMA) (TSI Inc., Saint Paul, MN, USA) and the mass was selected by a Centrifugal Particle Mass Analyzer (CPMA) (Cambustion Ltd., Cambridge, UK) before thermodenuding. The first set of samples consisted of nascent and nascent-denuded soot, while the second set consisted of nascent-oxidized and nascent-oxidized-denuded soot. Soot was oxidized by exposure to ozone (O 3 ) and hydroxyl (OH) radicals in a Potential Aerosol Mass (PAM) oxidation flow reactor [54], at input O 3 and H 2 O mixing ratios of~15 ppm and~1%, and UV actinic flux~2 × 10 12 ph cm −2 s −1 (λ = 254 nm). These operating conditions correspond to an integrated OH exposure of approximately 2 × 10 12 molec cm −3 s [55], and likely generate highly oxygenated organic molecules, such as carboxylic acids on the surface of the nascent-oxidized soot particles [56]. The nascent-oxidized soot was thermo-denuded at a temperature of 270 • C. The set of nascent-oxidized soot samples was included here to investigate if the thermodenuding effect is different for nascent versus nascent-oxidized soot. During BC4, soot particles were collected on 13 mm diameter Nuclepore filters having a pore size of 0.1 µm diameter (Whatman Inc., Chicago, IL, USA).
All the filters were coated with 1.8 (±10%) nm thick layer of Pt/Pd alloy in a sputter coater (Hummer ® 6.2, Anatech USA, Union city, CA, USA) and imaged with a field emission scanning electron microscope (FE-SEM) (Hitachi S-4700, Tokyo, Japan). From the FE-SEM images, several morphological parameters were evaluated [6] using the image processing software ImageJ (National Institutes of Health, Bethesda, MD, USA) [57].

Soot Morphological Parameters
As mentioned in the introduction, soot particles are aggregates of monomers that exhibit scale-invariant fractal structures [58,59]. Soot aggregates can therefore be characterized by a fractal dimension (D f ), in which the mass of the aggregate M (proportional to the number of monomers N in the aggregate) scales with the ratio of the radius of gyration (R g ) to the radius of the monomers (R p ), [60]. D f is a commonly used parameter to quantify the soot morphology. Lacy soot particles have low D f values, while compact soot particles have higher D f values. The D f of an ensemble of soot particles can be calculated by plotting N vs. R g (or a surrogate for it). N scales with R g as a power law with exponent D f [61]: where k g is a pre-factor whose value depends on the overlap between the monomers in the aggregate. The relation formulated by Köylü et al. [61] was used to estimate D f with the geometric mean diameter of the aggregate, √ LW, as a surrogate for 2R g : where L is the maximum length and W is the maximum width (orthogonal to L), K LW is a prefactor and R p is calculated from the mean of the projected area of the monomer. In general, it is difficult to measure N using an SEM image alone, because only two-dimensional (2-D) projections of the soot particles are typically available. Therefore, N is often estimated from the projected area of the soot aggregate A p and the mean projected area of the monomers A m using the relation provided by Oh and Sorensen [62]: where α and k a are constants that depend on the overlap between monomers in the 2-D projected image of the particle. In our case, we used K a = 1.15 and α = 1.09 for all of our nascent and nascent-denuded soot aggregates [61]. This selection of K a and α values is reasonable since we only studied nascent soot particles that are minimally coated.
In addition to D f , several other 2-D morphological parameters were calculated from the FE-SEM images to investigate potential changes due to thermodenuding. The calculated parameters included roundness, convexity, aspect ratio (AR), and area equivalent diameter (D Aeq ). Figure 2a shows the definition of some of these parameters. D Aeq is the diameter of a spherical particle with a projected area equivalent to the projected area of the aggregate. Roundness is calculated from the ratio of the projected area of the aggregate to the area of the circle having a diameter equal to the maximum projected length L, and fully inscribing the projected image of the aggregate (Figure 2b). Convexity (sometimes termed solidity) is the ratio of the projected area of the particle to the area of the smallest convex hull polygon, in which the 2-D projection of the aggregate is inscribed (Figure 2c). AR is calculated as the ratio of L to W. Higher values of roundness and convexity or lower AR often corresponds to more compact soot particles. However, it has to be noted that D f , roundness and convexity are parameters with very different meanings and definitions. The first is a scaling factor, the second is a geometric property, and the third is a measure of the particle topology. That is why we investigated all of these three parameters to characterize the morphology of soot rather than looking at a single one. We analyzed a total of 1223 images of individual soot particles.

Results and Discussion
As mentioned earlier, we analyzed images from four sets of nascent and nascent-denuded soot sample pairs of different sizes and a fifth set of nascent-oxidized denuded soot. Examples of images of soot particles before and after thermodenuding are shown in Figure 3. N1, N2, N3, and N4 are four differently sized nascent soot samples and D1, D2, D3, and D4 are the corresponding nascent-denuded sets. N5-D5 is a pair of nascent-oxidized soot before and after thermodenuding. Table 1 summarizes the features of the analyzed soot particles. Sets N1-D1, N2-D2, and N3-D3 are the three sets from BC2, while sets N4-D4, and N5-D5 are from BC4.

Results and Discussion
As mentioned earlier, we analyzed images from four sets of nascent and nascent-denuded soot sample pairs of different sizes and a fifth set of nascent-oxidized denuded soot. Examples of images of soot particles before and after thermodenuding are shown in Figure 3.

Results and Discussion
As mentioned earlier, we analyzed images from four sets of nascent and nascent-denuded soot sample pairs of different sizes and a fifth set of nascent-oxidized denuded soot. Examples of images of soot particles before and after thermodenuding are shown in Figure 3. N1, N2, N3, and N4 are four differently sized nascent soot samples and D1, D2, D3, and D4 are the corresponding nascent-denuded sets. N5-D5 is a pair of nascent-oxidized soot before and after thermodenuding. Table 1 summarizes the features of the analyzed soot particles. Sets N1-D1, N2-D2, and N3-D3 are the three sets from BC2, while sets N4-D4, and N5-D5 are from BC4.  N1, N2, N3, and N4 are four differently sized nascent soot samples and D1, D2, D3, and D4 are the corresponding nascent-denuded sets. N5-D5 is a pair of nascent-oxidized soot before and after thermodenuding. Table 1 summarizes the features of the analyzed soot particles. Sets N1-D1, N2-D2, and N3-D3 are the three sets from BC2, while sets N4-D4, and N5-D5 are from BC4. In Table 1, E = ethylene and M = methane represent the fuel type. N is the average number of monomers per aggregate, estimated in each sample using Equation (3). K g values have been estimated using the relation K g = K LW ·(1.17) Df where √ LW/2R g = 1.17 has been taken from Köylü et al. [61] and the values of K LW and D f have been calculated from a log-log plot using Equation (2). dp is the mean diameter of the monomers in an aggregate, d m is the mean mobility diameter (in nm) and M CPMA represents the mean mass of the particle (in fg) as measured by the CPMA. For D f the term in parenthesis is the standard error (S.E.) calculated from the power fit using Equation (2), for the other quantities, it is the S.E. (standard deviation of the mean) and the standard deviation (S.D.).
The largest decrease in the mean value of d p (by 5.6%) after thermodenuding is found for the N3-D3 set. The decrease in d p could be due to the partial removal of material volatile at the TD temperature and present on the nascent soot. A decrease in the monomer size after thermal treatment was previously observed when soot samples were heated at higher temperatures (400-900 • C) due to the removal of a part of the nascent PAH layers from the monomers surface [63]. Also, the mean d p size, as well as the differences in the mean values of d p after thermodenuding are smaller for the inverted diffusion flame with respect to those of the McKenna flame. These changes suggest that there was less volatile material present in the nascent soot generated from the inverted flame. This effect could be due to the different type of fuel, as well as different ∅. In a study of ethylene flame generated soot from a McKenna burner, the size of d p in thermodenuded soot particles was found larger for higher ∅ [64]. This is consistent with the study by Ghazi and Olfert [16] that generated soot by an inverted diffusion flame and found no measurable amount of volatile material when the mass was measured after thermodenuding. While, Slowik et al. [64], using a McKenna flame, found that thermodenuding removed only about 0.05 mass fraction of volatile material for the nascent soot containing 0.1 mass fraction of non-refractory material (at ∅ = 2.1) from an ethylene flat flame.
To investigate whether the soot aggregates restructured after thermodenuding, we first analyze the changes in D f as summarized in Figure 4. For all five sample sets, Df lies between 1.65 and 1.86 (Table 1). The derivation of Df and plots for all of the samples are shown in the supplementary material ( Figure S1). These values of Df are in agreement with the observations made in previous studies on nascent soot particles produced from different fuel sources [3,65]. Also for all nascent vs. denuded pairs (except for the nascent-oxidized pair: N5-D5), there is no significant change (within 1 ) in Df after thermodenuding (Figure 4). For the N5-D5 pair, the Df changes by about 9% (from 1.65 to 1.80), whereas for all other cases, the change is less than 2.3%. The CPMA data for the BC4 sample shows that the mass decreased from 2.37 to 2.34 fg for nascent soot, while for the nascent-oxidized soot of the same mobility size, the mass decreased from 2.41 to 2.18 fg after thermodenuding. The larger decrease in mass for the nascent oxidized soot suggests that the coating material on the oxidized soot was removed during thermodenuding. A possible explanation for the increase of Df after thermodenuding the oxidized soot might be that the soot structure was slightly modified during the evaporation of the coating material. Interestingly, for the BC2 soot samples, there is no significant change in Df despite the significant change in mass (up to ~29%) of soot after thermodenuding (see CPMA data in Table 1). This result suggests that for the BC2 sample sets, the removal of the coating present on nascent soot did not affect the structure of soot. This is most probably due to the chemical composition of the organics that were removed by TD. This result is consistent with the thermodenuding experiment of uncoated soot (fractal soot generated at lower ∅ = 2.1) by Slowik et al. [64] that found no change in Df (derived from massmobility relation in their case) after denuding. They suggested that the removal of organics from the uncoated soot during denuding cannot change the skeletal framework of soot. Cross et al. [9] observed only minor restructuring of soot when dioctyl sebacate coating was removed by thermodenuding, suggesting that the removal of organic coating may have little impact on the restructuring of soot. For soot from a flat flame burner, Slowik et al. [66] found that the organic carbon (OC) content (mass fraction of 0.1) was composed of a comparable amount of aliphatic and aromatic compounds at a lower ∅ ∅ = 1.85 , but at a higher ∅ ∅ 4 , the OC content (mass fraction of 0.55) had only a minor fraction of aliphatic compounds. We thus hypothesize that the nascent organics on the soot from the BC2 experiments considered here consisted in a large fraction of aliphatic compounds.
To account for the mass change after thermodenuding on the coating of soot particle, we calculated coating thickness (ΔRve) in terms of volume equivalent radius (Rve). The difference between the volume equivalent radius of nascent soot and the thermodenuded soot particle was used to For all five sample sets, D f lies between 1.65 and 1.86 (Table 1). The derivation of D f and plots for all of the samples are shown in the supplementary material ( Figure S1). These values of D f are in agreement with the observations made in previous studies on nascent soot particles produced from different fuel sources [3,65]. Also for all nascent vs. denuded pairs (except for the nascent-oxidized pair: N5-D5), there is no significant change (within 1σ) in D f after thermodenuding (Figure 4). For the N5-D5 pair, the D f changes by about 9% (from 1.65 to 1.80), whereas for all other cases, the change is less than 2.3%. The CPMA data for the BC4 sample shows that the mass decreased from 2.37 to 2.34 fg for nascent soot, while for the nascent-oxidized soot of the same mobility size, the mass decreased from 2.41 to 2.18 fg after thermodenuding. The larger decrease in mass for the nascent oxidized soot suggests that the coating material on the oxidized soot was removed during thermodenuding. A possible explanation for the increase of D f after thermodenuding the oxidized soot might be that the soot structure was slightly modified during the evaporation of the coating material. Interestingly, for the BC2 soot samples, there is no significant change in D f despite the significant change in mass (up to~29%) of soot after thermodenuding (see CPMA data in Table 1). This result suggests that for the BC2 sample sets, the removal of the coating present on nascent soot did not affect the structure of soot. This is most probably due to the chemical composition of the organics that were removed by TD. This result is consistent with the thermodenuding experiment of uncoated soot (fractal soot generated at lower ∅ = 2.1) by Slowik et al. [64] that found no change in D f (derived from mass-mobility relation in their case) after denuding. They suggested that the removal of organics from the uncoated soot during denuding cannot change the skeletal framework of soot. Cross et al. [9] observed only minor restructuring of soot when dioctyl sebacate coating was removed by thermodenuding, suggesting that the removal of organic coating may have little impact on the restructuring of soot. For soot from a flat flame burner, Slowik et al. [66] found that the organic carbon (OC) content (mass fraction of 0.1) was composed of a comparable amount of aliphatic and aromatic compounds at a lower ∅ (∅ = 1.85), but at a higher ∅ (∅ > 4), the OC content (mass fraction of 0.55) had only a minor fraction of aliphatic compounds. We thus hypothesize that the nascent organics on the soot from the BC2 experiments considered here consisted in a large fraction of aliphatic compounds.
To account for the mass change after thermodenuding on the coating of soot particle, we calculated coating thickness (∆R ve ) in terms of volume equivalent radius (R ve ). The difference between the volume equivalent radius of nascent soot and the thermodenuded soot particle was used to estimate the thickness of the coating material. For the case of maximum mass loss (~29%), coating thickness was estimated to be 8.4 nm. (See supplementary material for the calculation).
To further investigate possible morphological changes after thermodenuding, we studied the convexity and roundness of soot particles for all five sample sets. The maximum change in the mean value of roundness occurs for set N3-D3 (about 18%), followed by the set N4-D4 (about 13%). For the other sets, the mean value of roundness changes by less than 10%. For the case of convexity, the maximum change in the mean value occurs for set N4-D4 (about 8%). For all other sets, the mean value of convexity changes by less than 5%. The larger changes in roundness and convexity for these sample sets are statistically significant (at 1σ) although still minor.
We should point out, however, that image acquisition conditions (e.g., due to different magnifications, scan rates or over/under focusing) and image processing biases (e.g., image thresholding) can introduce additional errors in roundness, convexity, and D f . In some cases, these errors are larger than the statistical errors provided in Table 1. To quantify these uncertainties, we acquired multiple images of six individual particles (from sample N5) and processed them under different conditions, as mentioned above. We estimated the uncertainties due to image acquisition and image processing biases in roundness and convexity to be 0.01 and 0.02, respectively. Similarly, uncertainties in N and d p were estimated to be 16% and 13% (3.4 nm), respectively, which resulted in an error of 0.08 in D f .
In Figure 5a,b we show box and whisker plots for the convexity and the roundness, respectively of the soot particles before and after thermodenuding. The convexity ranges from 0.37 to 0.91, while the roundness ranges from 0.09 to 0.75 (see Table 1 for details). No substantial changes in roundness or convexity are evident after thermodenuding. To further investigate possible morphological changes after thermodenuding, we studied the convexity and roundness of soot particles for all five sample sets. The maximum change in the mean value of roundness occurs for set N3-D3 (about 18%), followed by the set N4-D4 (about 13%). For the other sets, the mean value of roundness changes by less than 10%. For the case of convexity, the maximum change in the mean value occurs for set N4-D4 (about 8%). For all other sets, the mean value of convexity changes by less than 5%. The larger changes in roundness and convexity for these sample sets are statistically significant (at 1σ) although still minor.
We should point out, however, that image acquisition conditions (e.g., due to different magnifications, scan rates or over/under focusing) and image processing biases (e.g., image thresholding) can introduce additional errors in roundness, convexity, and Df. In some cases, these errors are larger than the statistical errors provided in Table 1. To quantify these uncertainties, we acquired multiple images of six individual particles (from sample N5) and processed them under different conditions, as mentioned above. We estimated the uncertainties due to image acquisition and image processing biases in roundness and convexity to be 0.01 and 0.02, respectively. Similarly, uncertainties in N and dp were estimated to be 16% and 13% (3.4 nm), respectively, which resulted in an error of 0.08 in Df.
In Figure 5a,b we show box and whisker plots for the convexity and the roundness, respectively of the soot particles before and after thermodenuding. The convexity ranges from 0.37 to 0.91, while the roundness ranges from 0.09 to 0.75 (see Table 1 for details). No substantial changes in roundness or convexity are evident after thermodenuding. In Figure 6, we show the probability distributions of convexity and roundness for all nascent and denuded soot pairs. The solid and the dashed lines represent the mean values for nascent and denuded soot, respectively, while the shaded color bands in blue and orange represent one standard deviation. These means and uncertainty bands were calculated with a bootstrap approach, resampling with replacement from the raw data and constructing 100,000 frequency distributions [67]. In Figure 6, we show the probability distributions of convexity and roundness for all nascent and denuded soot pairs. The solid and the dashed lines represent the mean values for nascent and denuded soot, respectively, while the shaded color bands in blue and orange represent one standard deviation. These means and uncertainty bands were calculated with a bootstrap approach, resampling with replacement from the raw data and constructing 100,000 frequency distributions [67]. For the N3-D3 pair, the distribution of convexity and roundness peaks at slightly lower values after thermodenuding. The convexity of particles decreases slightly with the increasing value of the mobility diameter for both nascent and denuded particles. This suggests that the smaller soot particles are more compact when compared to larger particles, in agreement with previous studies [68,69]. Figure  6a also suggests that for smaller mobility diameters, the convexity of soot from the ethylene diffusion flame might be less affected by thermodenuding as compared to the larger sized particles. With the methane diffusion flame (N4-D4 and N5-D5 sets) particles showed negligible changes in roundness and convexity after thermodenuding, for both nascent and nascent-oxidized soot (Figure 6a N4-D4 and N5-D5, respectively).
For completeness, we also investigated the changes in AR and DAeq. Both show only small changes after thermodenuding (Table 1). Our observations on the five sets of soot pairs show only minor changes in the morphology of nascent soot after thermodenuding.
To study the potential effect of PAM on nascent soot prior to thermodenuding, we compared the parameters between N4 (nascent soot without oxidation in PAM) and N5 (nascent soot with oxidation in PAM) samples. N4 and N5 have comparable masses of 2.37 fg and 2.41 fg, respectively, and a similar mobility diameter ~250 nm. A total of 113 and 122 individual soot particles were analyzed for N4 and N5, respectively. Both samples show nearly the same number of monomers in the soot particles imaged. N4 has 158 and N5 has 155 monomers on average. Also, the mean diameter of monomers is similar in the two samples, 23.5 nm for N4 and 23.9 nm for N5. The similar key properties of the soot particles in the two experiments suggest that N4 and N5 are suitable samples to make a comparison of nascent soot experiments with and without PAM reactor without thermodenuding.
The roundness for N4 (0.31) and for N5 (0.33) and the convexity (0.61 for both N4 and N5) are within the error bars. However, Df for N5 (1.65) is smaller than for N4 (1.80). The value of Df for N5 is somehow smaller than the values typically found for nascent soot (1.7-1.9), but lie within the limit when the imaging and thresholding uncertainties discussed above are added in quadrature to the statistical errors. However, in the downstream of the thermodenuder, D5 and D4 (samples with and without PAM treatment, respectively) show comparable values of roundness (0.35 for D4 and 0.33 for D5), convexity (0.66 for D4, and 0.63 for D5), and Df (1.76 for D4 and 1.80 for D5). Since we have only one set for the nascent-oxidized soot, we are unable to draw a firm conclusion on the effect of For the N3-D3 pair, the distribution of convexity and roundness peaks at slightly lower values after thermodenuding. The convexity of particles decreases slightly with the increasing value of the mobility diameter for both nascent and denuded particles. This suggests that the smaller soot particles are more compact when compared to larger particles, in agreement with previous studies [68,69]. Figure 6a also suggests that for smaller mobility diameters, the convexity of soot from the ethylene diffusion flame might be less affected by thermodenuding as compared to the larger sized particles. With the methane diffusion flame (N4-D4 and N5-D5 sets) particles showed negligible changes in roundness and convexity after thermodenuding, for both nascent and nascent-oxidized soot (Figure 6a N4-D4 and N5-D5, respectively).
For completeness, we also investigated the changes in AR and D Aeq . Both show only small changes after thermodenuding (Table 1). Our observations on the five sets of soot pairs show only minor changes in the morphology of nascent soot after thermodenuding.
To study the potential effect of PAM on nascent soot prior to thermodenuding, we compared the parameters between N4 (nascent soot without oxidation in PAM) and N5 (nascent soot with oxidation in PAM) samples. N4 and N5 have comparable masses of 2.37 fg and 2.41 fg, respectively, and a similar mobility diameter~250 nm. A total of 113 and 122 individual soot particles were analyzed for N4 and N5, respectively. Both samples show nearly the same number of monomers in the soot particles imaged. N4 has 158 and N5 has 155 monomers on average. Also, the mean diameter of monomers is similar in the two samples, 23.5 nm for N4 and 23.9 nm for N5. The similar key properties of the soot particles in the two experiments suggest that N4 and N5 are suitable samples to make a comparison of nascent soot experiments with and without PAM reactor without thermodenuding.
The roundness for N4 (0.31) and for N5 (0.33) and the convexity (0.61 for both N4 and N5) are within the error bars. However, D f for N5 (1.65) is smaller than for N4 (1.80). The value of D f for N5 is somehow smaller than the values typically found for nascent soot (1.7-1.9), but lie within the limit when the imaging and thresholding uncertainties discussed above are added in quadrature to the statistical errors. However, in the downstream of the thermodenuder, D5 and D4 (samples with and without PAM treatment, respectively) show comparable values of roundness (0.35 for D4 and 0.33 for D5), convexity (0.66 for D4, and 0.63 for D5), and D f (1.76 for D4 and 1.80 for D5). Since we have only one set for the nascent-oxidized soot, we are unable to draw a firm conclusion on the effect of thermodenuding on such particles. Although at the time, we have no clear explanation for the minor difference in D f , it is possible that the different nanophysical properties of the nascent-oxidized soot might indeed result in a higher sensitivity to thermodenuding.
From a study of young and mature soot particles under high-resolution transmission electron microscopy (HRTEM), Alfè et al. [70] found no significant difference in the nanostructure of soot monomers. In addition, they found that the change in the H/C ratio is smaller for methane soot when compared to that of other fuels. In another study, Vander Wal and Tomasek [71], also using HRTEM, reported that the oxidation rate of nascent soot depends upon the nanostructure, for example, the length of graphene segments, curvature, and its orientation. Ishiguro et al. [72], Song et al. [73], Müller et al. [74], also showed a relation between the monomers nanostructure and the soot oxidation from different fuel sources. Other studies showed negligible influence of ozone on soot oxidation [75,76], as compared to the OH radical. In another study of soot oxidation [77], both the ozone and OH at atmospherically relevant levels were found to have no effect on the oxidation of the elemental carbon (EC) fraction in soot. In our case, the CPMA data showed that the main fraction (>90%) of methane-generated soot consisted of EC, suggesting that the oxidation in the PAM chamber might have a negligible effect on the overall morphology of soot.
In a study on the fragmentation and bond strength of diesel soot, Rothenbacher et al. [53] made a comparison between nascent soot treated with and without a TD as a function of impact velocity, and found no substantial change in the degree of fragmentation of nascent soot aggregates due to the thermodenuding. A low-pressure impactor was used to impart velocities of up to 300 m/s to the soot particles. The TD used in their study had a residence time of 0.43 s, and the sample was heated to 280 • C. In another study by Raj et al. [63], soot fragmentation was observed after thermodenuding in the temperature range of 400-900 • C on diesel soot and commercial soot (Printex-U). However, in the lower temperature range, below 500 • C, they found a minor effect on soot fragmentation. Bambha et al. [26] noticed only a small effect of thermodenuding at 410 • C (transit time of~34 s) on the morphology of soot during the removal of oleic acid coating. In another study, Slowik et al. [64] did not observe any measurable change in the structure of soot when fresh soot (generated at ∅ = 2.1 and 3.5) was thermodenuded at 200 • C. Our results of the negligible or minor restructuring of thermodenuded soot particles are in agreement with these previous studies suggesting that these results are robust and reproducible.

Conclusions
In this study, we used scanning electron microscopy to investigate the morphology of nascent soot aggregates prior to, and after, thermodenuding in a low-temperature regime (<270 • C). Despite mass losses of up to~29% in the nascent soot (removal of~8 nm coating layer from the soot surface), we detected only minor effects on the soot structure after thermodenuding, irrespective of the fuel type and particle size. We observed no significant change in the fractal dimension, although roundness and convexity showed some minor changes in our case. Future work should focus on the effect on the structure of nascent soot of higher thermodenuding temperatures.
Supplementary Materials: The following are available online at www.mdpi.com/2073-4433/8/9/166/s1, Figure S1: Plots of fractal dimension of nascent-denuded soot pairs. The solid line and dashed line in each plot represent the slope for nascent and denuded soot respectively. participated in the planning, setting up and supervising of BC2 and BC4. Adam Ahern and Jason Olfert assisted in the experimental design and the experiments. Tim Onasch and Eben Cross led the BC2 experiments including operation of all experimental aspects of the project and analysis of the SMPS and CPMA data used here. Tim Onasch, Lindsay Wolff and Andrew Lambe led the BC4 experiment including operation of all experimental aspects of the project. Swarup China and Claudio Mazzoleni collected the samples during BC4 and BC2, respectively. Manvendra Dubey participated in the experiments and provided the instrumentation used for sampling during BC2. Janarjan Bhandari and Swarup China performed the SEM analysis. Janarjan Bhandari, Claudio Mazzoleni and Swarup China wrote most of the paper with significant contributions and edits from all the coauthors.

Conflicts of Interest:
The authors declare no conflict of interest.